Browse Gene Expression Data
Datasets # Samples Diseases
Liver Carcinoma vs. Normal
22277 Probes
2012-05-13 01:01:50
Total: 83

liver_bhattacharyya_gse29721MAS5_sorted_formatted_reduced.txt
20
liver_deng_gse19665MAS5_sorted_formatted_reduced.txt
20
liver_roessler_gse14520MAS5_sorted_formatted.txt
43
Prostate Carcinoma vs. Normal
12625 Probes
2012-05-13 00:50:16
Total: 226

chandran_prostate_labels.txt
124
singh_prostate_labels.txt
102
Renal Tumor Subtypes
8793 Probes
2012-04-05 17:55:54
Total: 179

renal_jones_mas5.txt
61
renal_kort_mas5.txt
40
renal_schuetz_mas5.txt
25
renal_yusenko_mas5.txt
53
Pancreatic Carcinoma vs. Normal
22277 Probes
2012-04-05 17:29:44
Total: 224

ishikawa_affyu133A_pancreatic_cancer_formatted_reduced.txt
49
badea_affyu133p2.0_pancreatic_cancer_mas5_formatted_reduced.txt
78
pei_affyu133p2.0_pancreatic_cancer_mas5_formatted_reduced.txt
52
pilarsky_affyu133A_pancreatic_cancerMAS5_formatted_reduced.txt
45
Additional Data Information
Renal Tumor Subtype
Data Name Sample Groups and Labels Platform # of Probes Publication Original Source
Subtype Clear Cell Papillary Oncocytoma Chromophobe
Label 1 2 3 4
Jones # of Samples 32 11 12 6 Affymetrix: Human Genome U133A 22283 Jones J, Otu H, Spentzos D, Kolia S, Inan M, Beecken WD, Fellbaum C, Gu X, Joseph M, Pantuck AJ, Jonas D, Libermann TA. Gene signatures of progression and metastasis in renal cell cancer. Clin Cancer Res. 2005 Aug 15; 11(16): 5730-9. pubmed GEO: GSE15641
Kort # of Samples 10 17 7 6 Affymetrix: Human Genome U133 Plus 2.0 54675 Kort EJ, Farber L, Tretiakova M, Petillo D, Furge KA, Yang XJ, Cornelius A, Teh BT. The E2F3-Oncomir-1 axis is activated in Wilms' tumor. Cancer Res. 2008 Jun 1; 68(11): 4034-8. pubmed GEO: GSE11024
Schuetz # of Samples 13 5 3 4 Affymetrix: Human Genome Focus 8793 Schuetz AN, Yin-Goen Q, Amin MB, Moreno CS, Cohen C, Hornsby CD, Yang WL, Petros JA, Issa MM, Pattaras JG, Ogan K, Marshall FF, Young AN. Molecular classification of renal tumors by gene expression profiling. J Mol Diagn. 2005 May; 7(2):206-18. pubmed
Yusenko # of Samples 26 19 4 4 Affymetrix: Human Genome U133 Plus 2.0 54675 Yusenko MV, Kuiper RP, Boethe T, Ljungberg B, van Kessel AG, Kovacs G. High-resolution DNA copy number and gene expression analyses distinguish chromophobe renal cell carcinomas and renal oncocytomas. BMC Cancer. 2009 May 18; 9:152.pubmed GEO: GSE11151
All datasets have been reduced to a common set of 8793 probes.

Prostate Carcinoma vs. Normal
Data Name Sample Groups and Labels Platform # of Probes Publication Original Source
Sample Cancer Normal
Label -1 1
Chandran # of Samples 61 63 Affymetrix: Human Genome U95Av2 12625 Chandran UR, Dhir R, Ma C, Michalopoulos G, Becich M, Gilbertson J. Differences in gene expression in prostate cancer, normal appearing prostate tissue adjacent to cancer and prostate tissue from cancer free organ donors. BMC Cancer. 2005 May 13; 5:45. pubmed GEO: GSE6608
Singh # of Samples 52 50 Affymetrix: Human Genome U95Av2 12625 Singh D, Febbo PG, Ross K, Jackson DG, Manola J, Ladd C, Tamayo P, Renshaw AA, D'Amico AV, Richie JP, Lander ES, Loda M, Kantoff PW, Golub TR, Sellers WR. Gene expression correlates of clinical prostate cancer behavior. Cancer Cell. 2002 Mar; 1(2):203-9. pubmed Broad Institute

Liver Carcinoma vs. Normal
Data Name Sample Groups and Labels Platform # of Probes Publication Original Source
Sample Cancer Normal
Label -1 1
Deng # of Samples 10 10 Affymetrix: Human Genome U133 Plus 2.0 54675 Deng YB, Nagae G, Midorikawa Y, Yagi K, Tsutsumi S, Yamamoto S, Hasegawa K, Kokudo N, Aburatani H, Kaneda A. Identification of genes preferentially methylated in hepatitis C virus-related hepatocellular carcinoma. Cancer Sci. 2010 Jun; 101(6):1501-10. Epub 2010 Feb 27. pubmed GEO: GSE19665
Roessler # of Samples 22 21 Affymetrix: Human Genome U133A 22283 Roessler S, Long EL, Budhu A, Chen Y, Zhao X, Ji J, Walker R, Jia HL, Ye QH, Qin LX, Tang ZY, He P, Hunter KW, Thorgeirsson SS, Meltzer PS, Wang XW. Integrative genomic identification of genes on 8p associated with hepatocellular carcinoma progression and patient survival. Gastroenterology. 2012 Apr;142(4):957-966.e12. Epub 2011 Dec 24. pubmed GEO: GSE14520
Stefanska # of Samples 10 10 Affymetrix: Human Genome U133 Plus 2.0 54675 Stefanska B, Huang J, Bhattacharyya B, Suderman M, Hallett M, Han ZG, Szyf M. Definition of the landscape of promoter DNA hypomethylation in liver cancer. Cancer Res. 2011 Sep 1;71(17):5891-903. Epub 2011 Jul 11. pubmed GEO: GSE29721
All datasets have been reduced to a common set of 22277 probes.

Pancreatic Carcinoma vs. Normal
Data Name Sample Groups and Labels Platform # of Probes Publication Original Source
Sample Cancer Normal
Label -1 1
Badea # of Samples 39 39 Affymetrix: Human Genome U133 Plus 2.0 54675 Badea L, Herlea V, Dima SO, Dumitrascu T, Popescu I. Combined gene expression analysis of whole-tissue and microdissected pancreatic ductal adenocarcinoma identifies genes specifically overexpressed in tumor epithelia. Hepatogastroenterology. 2008 Nov-Dec;55(88):2016-27. pubmed GEO: GSE15471
Ishikawa # of Samples 24 25 Affymetrix: Human Genome U133A 22283 Ishikawa M, Yoshida K, Yamashita Y, Ota J, Takada S, Kisanuki H, Koinuma K, Choi YL, Kaneda R, Iwao T, Tamada K, Sugano K, Mano H. Experimental trial for diagnosis of pancreatic ductal carcinoma based on gene expression profiles of pancreatic ductal cells. Cancer Sci. 2005 Jul; 96(7):387-93. pubmed GEO: GSE1542
Pei # of Samples 36 16 Affymetrix: Human Genome U133 Plus 2.0 54675 Pei H, Li L, Fridley BL, Jenkins GD, Kalari KR, Lingle W, Petersen G, Lou Z, Wang L. FKBP51 affects cancer cell response to chemotherapy by negatively regulating Akt. Cancer Cell. 2009 Sep 8; 16(3):259-66. pubmed GEO: GSE16515
Pilarsky # of Samples 27 18 Affymetrix: Human Genome U133A 22283 Pilarsky C, Ammerpohl O, Sipos B, Dahl E, Hartmann A, Wellmann A, Braunschweig T, Lohr M, Jesenofsky R, Friess H, Wente MN, Kristiansen G, Jahnke B, Denz A, Ruckert F, Schackert HK, Kloppel G, Kalthoff H, Saeger HD, Grutzmann R. Activation of Wnt signalling in stroma from pancreatic cancer identified by gene expression profiling. J Cell Mol Med. 2008 Dec; 12(6B):2823-35. Epub 2008 Feb 24. pubmed ArrayExpress: E-MEXP-1121
All datasets have been reduced to a common set of 22277 probes.
Powered By:



Contact:
Please use Firefox or Google Chrome. Support for Internet Explorer is still under development.